Unless you're making close to 300bhp n/a, 48mm TBs are too big.
45s are good enough for 260bhp.
40s should see 200bhp.
When the TB is way too big you have a lot of airflow with very little throttle movement, especially just off idle.
At the moment you're probably supplying your engine's max airflow demand at approx 60% throttle position, making your accelerator pedal behave almost like an on/off switch.
Pushing the pedal upwards of 60% makes no difference to performance because the engine can't make use of what's available.
I've never used a TB venturi so don't know how it will respond.
Ideally you size TBs so they're capable of supplying the engine's peak airflow requirements but with no more in reserve than necessary.
This delivers best pedal graduation and response.
You could change leverage of the various parts in the connection between the pedal and TB to slow down movement at the butterfly and maybe use a stop to prevent throttle position straying beyond the throttle position % that achieves max power. Then reset open and closed settings for the TPS. Don't know if that's possible with megasquirt?
But it's a bodge
A venturi should help but still doesn't overcome the fact the butterfly is too big.
I think people assume TB sizing isn't too important with EFI. It does make a difference.